Fractionation of phenolic compounds in thermomechanical pulp mills was performed with a coupling of a prior treatment realized by flotation and a ceramic membrane process. Two lines of membranes filtration were tested. After a common 150 kDa clarification, 1 kDa filtration was performed with or without previous 5 kDa filtration. Flotation was shown to be inevitable to retain lipophilic compounds which cause severe membrane fouling. 150 kDa permeate flux was 20% higher when process water was firstly floated and was around 260 L h−1 m−2. 1 kDa membrane was fouled with 31% of irreversible fouling without previous 5 kDa filtration and phenolic compounds purity reached only 26% in this 1 kDa permeate. Phenolic compounds as lignin-like substances which might be attached to hemicelluloses were recovered in 5 kDa retentate. Retentate of 1 kDa might contain a major fraction of lignin derivatives with molecular weights around 1 kDa free or linked with phenolic acids. Permeate of 1 kDa contained 14% of phenolic compounds such as lignans and free phenolic acids purified at 50%.